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David Stokes


Current position: Professor, Department of Cell Biology, NYU Grossman School of Medicine, USA

During his AIAS-COFUND Fellowship David Stokes worked on the project 'Molecular Mechanisms of Ion Transport across Biological Membranes'

Project at AIAS

In order to control the cellular environment, membranes are used to surround cells and to form internal compartments. Traffic across these membrane is mediated by a wide variety of embedded protein molecules. Our goal is to gain insight into the mechanisms by which ions are transported across these membranes. Specifically, our work addresses two model bacterial systems that are highly amenable to structural and biochemical analyses. Overarching questions include how changes in the molecular structure are used to carry ions across the otherwise impermeable barrier and how these structural changes are driven by diverse energy sources such as ATP and the proton motive force. The first model system is an ATP-driven potassium pump called KdpFABC that is responsible for the stress response to potassium deficiency. The second model system is a zinc transporter called YiiP that uses the proton-motive force to maintain zinc homeostasis. We use biochemical and biophysical methods to characterize the functional consequences of selected mutations and use X-ray crystallography and cryo-electron microscopy to reveal structural changes related to the transport mechanism.

Short bio

David trained in biophysics and electron microscopy with undergraduate studies at U.C. Berkeley, graduate studies at Brandeis University and postdoctoral work in the United Kingdom. He uses these tools to study how molecular machines function. After early interests in actin assemblies, he became interested in membrane transporters, including the family of pumps discovered by Jens Skou at Aarhus University. David started his academic career at the University of Virginia and has been at New York University since 1995.

Project title:

Molecular Mechanisms of Ion Transport across Biological Membranes

Area of research:

Biophysics, Structural Biology

Fellowship period:

1 February 2021 - 31 July 2021